Package: funkycells
Title: Functional Data Analysis for Multiplexed Cell Images
Version: 1.1.1.9000
Authors@R: c(
    person("Jeremy", "VanderDoes", , "jeremy.vanderdoes@gmail.com", 
           role = c("aut", "cre", "cph"),
           comment = c(ORCID = "0009-0001-9885-3073")),
    person("Jack", "Hywood", role = "aut",
           comment = c(ORCID = "0000-0002-2028-2629")),
    person("Gregory", "Rice", role = "aut")
  )
Description: Compare variables of interest between (potentially large
        numbers of) spatial interactions and meta-variables. Spatial
        variables are summarized using K, or other, functions, and
        projected for use in a modified random forest model. The model
        allows comparison of functional and non-functional variables to
        each other and to noise, giving statistical significance to the
        results. Included are preparation, modeling, and interpreting
        tools along with example datasets, as described in VanderDoes
        et al., (2023) <doi:10.1101/2023.07.18.549619>.
License: GPL (>= 3)
URL: https://github.com/jrvanderdoes/funkycells,
        https://jrvanderdoes.github.io/funkycells/
BugReports: https://github.com/jrvanderdoes/funkycells/issues
Depends: R (>= 2.10)
Imports: fda, ggplot2, rpart, spatstat.explore, spatstat.geom, stats,
        stringr, tidyr
Suggests: knitr, pROC, rmarkdown, scales, testthat (>= 3.0.0)
VignetteBuilder: knitr
Config/testthat/edition: 3
Encoding: UTF-8
LazyData: true
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.2.3
Config/pak/sysreqs: make libicu-dev
Repository: https://jrvanderdoes.r-universe.dev
Date/Publication: 2023-08-11 02:56:58 UTC
RemoteUrl: https://github.com/jrvanderdoes/funkycells
RemoteRef: HEAD
RemoteSha: 53a257086f4d39c36069fbeb390d868e9e9bd475
NeedsCompilation: no
Packaged: 2026-06-16 09:07:59 UTC; root
Author: Jeremy VanderDoes [aut, cre, cph] (ORCID:
    <https://orcid.org/0009-0001-9885-3073>),
  Jack Hywood [aut] (ORCID: <https://orcid.org/0000-0002-2028-2629>),
  Gregory Rice [aut]
Maintainer: Jeremy VanderDoes <jeremy.vanderdoes@gmail.com>